Witryna12 gru 2024 · 自己制作一个python 脚本，可以命名为 change.py ， 内容如下所示： import os, sys os.getcwd () os.listdir (os.getcwd ()) import loompy as lp; import numpy as np; import scanpy as sc; x=sc.read_csv ("fibo_1000.csv"); row_attrs = {"Gene": np.array (x.var_names),}; col_attrs = {"CellID": np.array (x.obs_names)}; lp.create … Witrynawith loompy.new("outfile.loom") as dsout: for sample in samples: with loompy.connect(sample) as dsin: logging.info(f"Appending {sample}.") dsout.add_columns(ds.layers, col_attrs=dsin.col_attrs, row_attrs=dsin.row_attrs) You can also create a file by combining existing loom files ( loompy.combine () ).

Error importing add_scenic_metadata; scikit-learn version?[BUG] …

Witrynaimport loompy as lp import tensorflow as tf from sklearn.model_selection import train_test_split model_input_name = "" input_size = 10000 batch_size = 32 epochs = … Witryna24 mar 2024 · import loompy as lp; import numpy as np; import scanpy as sc; x=sc.read_csv(input_csv); row_attrs = {"Gene": np.array(x.var_names),}; col_attrs = {"CellID": … north dvd 1994

pySCENIC/arboreto_with_multiprocessing.py at master - Github

Witrynaimport loompy as lp import numpy as np import pandas as pd from ctxcore. genesig import GeneSignature, openfile from pyscenic. binarization import binarize from pyscenic. transform import df2regulons from pyscenic. utils import load_from_yaml, load_motifs, save_to_yaml __all__ = [ "save_matrix", "load_exp_matrix", … Witryna# The loom file format opted for rows as genes to facilitate growth along the column axis (i.e add more cells)# PySCENIC chose a different orientation because of limitation set by the feather format: selectively reading# information from disk can only be achieved via column selection. northeadish